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Tutorials
=========

On this page you will find some tutorials on how to use Biobuild. Feel free to browse through them to learn more.

.. _cards-clickable::

.. card:: Getting Started
   :link: example_getting_started
   :link-type: ref

   This tutorial covers the fundamentals of Biobuild. It is slightly more detailed than the "Basic Usage" page, however, and covers topics that the other tutorials elaborate on.


.. card:: A typical workflow
   :link: example_building_workflow
   :link-type: ref

   In this tutorial we will build a molecule to get the hang of a "typical" Biobuild workflow.


.. card:: Syntax Flavors
   :link: example_syntax
   :link-type: ref

   This tutorial covers the different syntax flavors that Biobuild supports.


.. card:: Visualizing Molecules
   :link: example_visualizing_molecules
   :link-type: ref

   This tutorial covers how to visualize molecules using Biobuild.


.. card:: Optimizing Molecules
   :link: example_optimization
   :link-type: ref

   This tutorial covers how to optimize molecular conformations in Biobuild.


.. card:: Converting Formats
   :link: example_converting_formats
   :link-type: ref

   This tutorial covers how to convert between different file formats and how to use other libraries with Biobuild.

.. card:: Built-in Resources
   :link: example_built_in_resources
   :link-type: ref

   This tutorial covers how to use the built-in resources of Biobuild.

.. card:: Adding Resources
   :link: example_defaults
   :link-type: ref

   This tutorial covers how to add your own resources to Biobuild so they are available to all your projects.

---

More applied tutorials
----------------------

.. card:: Building circular Molecules
   :link: example_building_circular
   :link-type: ref

   This tutorial covers how to build circular molecules in Biobuild together with RDKit.

.. card:: Building Polyphenylene
   :link: example_building_polyphenylene
   :link-type: ref

   In this tutorial we will build a polyphenylene dendrimer using some automization.